QuickBooks Desktop Sync Shopify App Alternatives November 2025
Are you currently using QuickBooks Desktop Sync for your Shopify store, but you're curious about other options available in the market? Look no further! We present you with 7 outstanding alternatives to QuickBooks Desktop Sync, carefully selected to meet a variety of e-commerce needs.
Top QuickBooks Desktop Sync alternatives
- A2X Sync for QuickBooks & Xero:
Automatic, precise bookkeeping in QuickBooks Online or Xero.
- Link My Books for Xero & QBO:
Easy and automatic bookkeeping. Trusted by thousands.
- Moneybird Bookkeeping:
Trustworthy and accurate syncing of orders to your bookkeeping software
- Taxomate QuickBooks Xero Sync:
Connect Sales and Fees with QuickBooks and Xero.
- Xero, QuickBooks or MYOB Sync:
Integration of sales accounting with Xero, QuickBooks, and MYOB.
- Open Payout:
Open your payment history in Xero or Quickbooks.
- NetSuite Smart Sync:
Combine data with NetSuite, Salesforce, HubSpot & QuickBooks.
A2X Sync for QuickBooks & Xero
Automatic, precise bookkeeping in QuickBooks Online or Xero.
Free Trial: 30 days
Pros
Highly responsive and knowledgeable support team, often providing personalized assistance and follow-ups.
Effortlessly connects Shopify, Amazon, and other platforms with accounting software like Xero and QuickBooks.
Significantly reduces manual bookkeeping by automating transaction categorization and reconciliation.
Cons
Pricing may be prohibitive for micro-businesses or startups.
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48
SD Points
2.44%
Market Share
Link My Books for Xero & QBO
Easy and automatic bookkeeping. Trusted by thousands.
Pros
Rapid response times, knowledgeable support, and personalized assistance.
Streamlines accounting processes by syncing sales data across multiple platforms.
Simple configuration and seamless connection with e-commerce and accounting tools.
Cons
Requires manual checks for PayPal transactions compared to other platforms.
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7
SD Points
0.24%
Market Share
Moneybird Bookkeeping
Trustworthy and accurate syncing of orders to your bookkeeping software
Free Trial: 30 days
Key Features
Easily synchronize (POS) orders and refunds between Shopify and Moneybird.
Customer data is synced automatically. Pick a regular POS customer.
Decide when to sync based on the order status.
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0
SD Points
0.14%
Market Share
Taxomate QuickBooks Xero Sync
Connect Sales and Fees with QuickBooks and Xero.
Free Trial: 14 days
Pros
Effortlessly syncs sales and financial data across Amazon, Shopify, Etsy, and other marketplaces into accounting software like QuickBooks and Xero.
Intuitive setup and navigation, making it accessible even for non-technical users.
Responsive and knowledgeable support team, often praised for quick issue resolution and helpful guidance.
Cons
Requires a correctly configured chart of accounts in QuickBooks for optimal functionality, which may need assistance.
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1
SD Points
0.08%
Market Share
Xero, QuickBooks or MYOB Sync
Integration of sales accounting with Xero, QuickBooks, and MYOB.
Free Trial: 7 days
Pros
The app provides a straightforward and user-friendly process for integrating Shopify with Xero.
The support team is highly praised for their responsiveness, knowledge, and helpfulness, including live video chat assistance.
Users report significant efficiency gains in syncing Shopify data with Xero, streamlining their workflow.
Cons
Some users note that the app fails to record edited, refunded, or partially refunded orders, limiting its usefulness.
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0
SD Points
0.07%
Market Share
Open Payout
Open your payment history in Xero or Quickbooks.
Free Trial: 30 days
Key Features
Connect Sales with Xero, FreshBooks and QuickBooks.
Get fast help through chat, video, or email.
Calculate VAT and GST easily by sales grouped by country.
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1
SD Points
0.03%
Market Share
NetSuite Smart Sync
Combine data with NetSuite, Salesforce, HubSpot & QuickBooks.
Free Trial: 7 days
Key Features
Sync your store and NetSuite instantly with Real-time Data Sync.
Order Management: Process orders automatically by syncing them.
Inventory Management: Maintain precise inventory levels by synchronizing your stock.
Customer Data Sync: Keep a combined customer database.
Manage Several Channels: Handle more than one Shopify store and NetSuite account.
Store Owner's Tip
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0
SD Points
0.01%
Market Share
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About QuickBooks Desktop Sync
QuickBooks Desktop Sync is a versatile Shopify app designed to help achieve the purpose: “Easily connect to QuickBooks Desktop. Track sales and handle inventory.”. This Shopify app is listed under Accounting category. It has garnered over 26 reviews with an average rating of 5 stars from Shopify merchants.
Some of its key features include:
- ✅QB Sales Record: Log sales in QB.
- ✅Automated Data Entry: Get rid of manual data entry and mistakes.
- ✅Inventory synchronization.: Update the stock list.
Besides, QuickBooks Desktop Sync is known for its Seamlessly transfers data between Shopify and QuickBooks, eliminating manual entry and saving significant time., Highly responsive, patient, and knowledgeable support team, often resolving issues via phone or screen share., Intuitive and easy to navigate, even for non-tech-savvy users., Adapts to unique business needs with tailored features and adjustments., Consistently works as promised with minimal glitches or downtime., Affordable pricing compared to alternatives, offering high value for small businesses., Ensures accurate stock updates between online and brick-and-mortar stores, preventing overselling..
Why Consider QuickBooks Desktop Sync Alternatives for Shopify?
While QuickBooks Desktop Sync may have its unique features and benefits, it's essential to periodically reevaluate your options to ensure that you're using the best tools to optimize your online store. Here are some reasons why you should explore QuickBooks Desktop Sync alternatives:
Diverse Needs: What worked initially with QuickBooks Desktop Sync may not fully address your current needs. By considering QuickBooks Desktop Sync alternatives, you can find apps that are better suited to your changing objectives.
Budget Constraints: While considering alternatives to QuickBooks Desktop Sync can impact your budget significantly. Some alternatives offer similar functionality at the same or reduced pricing level, while others may provide increased pricing but with added features that justify the investment.
Compatibility Issues: If you have encountered compatibility issues with QuickBooks Desktop Sync or have concerns about its integration with other essential tools and themes, exploring QuickBooks Desktop Sync alternatives can help you find apps that offer better compatibility and ease of use.
Feature Enhancement: Alternatives to QuickBooks Desktop Sync may offer innovative features that can give your Shopify store a competitive edge. By exploring these alternatives, you can tap into new capabilities and stay ahead in the dynamic e-commerce landscape.
In the following sections, we'll introduce you to some of the top alternatives to QuickBooks Desktop Sync.
Overview of the Best QuickBooks Desktop Sync Shopify Alternatives
There are several alternatives in the Shopify app store that can seamlessly replace or complement QuickBooks Desktop Sync. Whether you are looking for a change or just exploring your options, you are bound to find the perfect fit for your Shopify store. We have listed the top Shopify QuickBooks Desktop Sync alternatives based on their popularity and average rating.
| App Name | Developer | Starting Price | Free Plan | Reviews |
|---|---|---|---|---|
| A2X Sync for QuickBooks & Xero | A2X Software Limited | $29/month | Unavailable | 4.9 (317) |
| Link My Books for Xero & QBO | Link My Books | $21/month | Unavailable | 5.0 (33) |
| Moneybird Bookkeeping | Combidesk | $18/month | Unavailable | 2.5 (11) |
| Taxomate QuickBooks Xero Sync | taxomate | $14/month | Unavailable | 5.0 (6) |
| Xero, QuickBooks or MYOB Sync | Amaka | $0/month | Available | 4.3 (8) |
| Open Payout | Open Payout | $8/month | Unavailable | 3.0 (3) |
| NetSuite Smart Sync | pandaflow | $79/month | Unavailable | 5.0 (1) |
Have a Closer Look at the Best Alternatives to QuickBooks Desktop Sync
Now let us jump in and check out these top QuickBooks Desktop Sync alternatives.
1. A2X Sync for QuickBooks & Xero
4.9
(317)
Install Now
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2. Link My Books for Xero & QBO
5.0
(33)
Install Now
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3. Moneybird Bookkeeping
2.5
(11)
Install Now
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4. Taxomate QuickBooks Xero Sync
5.0
(6)
Install Now
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5. Xero, QuickBooks or MYOB Sync
4.3
(8)
Install Now
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6. Open Payout
3.0
(3)
Install Now
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7. NetSuite Smart Sync
5.0
(1)
Install Now
Our experts are here to help you.
How to Choose the Right QuickBooks Desktop Sync Alternative for Your Shopify Store
Choosing the right alternative to QuickBooks Desktop Sync for your Shopify store is a crucial decision that can significantly impact your e-commerce operations. To help you make an informed choice, consider the following factors.
Identify Your Needs: Make a list of features, integrations, or improvements you seek in a QuickBooks Desktop Sync alternative. Understanding your needs will serve as a guide when evaluating alternatives.
Compare Features: Compare the features of each alternative to QuickBooks Desktop Sync and see how they align with your needs. Pay attention to unique functionalities that may differentiate one alternative from another.
Check Reviews and User Feedback: Look for reviews from Shopify store owners who have used the QuickBooks Desktop Sync alternatives you are considering. Pay attention to both positive and negative comments to get a well-rounded view.
Pricing: Consider your budget and choose a QuickBooks Desktop Sync alternative that fits within your financial constraints. Some alternatives may be cost-effective, while others may be feature-rich but come at a higher price.
Scalability: Consider the long-term scalability of QuickBooks Desktop Sync alternatives. Choose an alternative that can adapt to your growing store needs.
Trial Period: If available, take advantage of any trial periods offered by QuickBooks Desktop Sync alternatives. Hands-on experience is invaluable in assessing usability, compatibility with your Shopify setup, and overall user-friendliness.
Support and Updates: Research the responsiveness of the support team behind each QuickBooks Desktop Sync alternative. Ensure that the alternative you choose has a responsive support team and receives regular updates.
Remember that the best QuickBooks Desktop Sync Shopify alternative will address your current requirements and position your store for future success.
More Information on QuickBooks Desktop Sync Shopify Alternatives
As you embark on your journey to find the perfect QuickBooks Desktop Sync alternative, the right choice can elevate your Shopify store's performance, enhance your customer shopping experience, and position you for growth in the competitive e-commerce landscape.
We've introduced you to a curated list of top QuickBooks Desktop Sync alternatives, each with its own strengths and advantages. Whether you're seeking a cost-effective solution or a feature-rich paid alternative, you have plenty of options to choose from.
Choosing the right QuickBooks Desktop Sync alternative requires careful consideration of your specific requirements, budget, and long-term goals. You can gain deeper insights into your selected apps by visiting our app comparison page. If you need expert guidance, ShopDigest can help you navigate this process effectively, from identifying your needs to assessing compatibility and support.
QuickBooks Desktop Sync Shopify Alternative Installation
There are thousands of QuickBooks Desktop Sync alternatives with different installation instructions, integration complexities, and customization levels. Our team at ShopDigest is here to assist you every step of the way. Installing your chosen app is a breeze with our service, ensuring a seamless integration into your store's ecosystem.
What's included
- Safely install/uninstall Shopify alternative app of your choice
- App integration with any theme as per specification
- Configurations & setup
- Assured support and guidance
- Get discount offers (not guaranteed)
What's not included
- Shopify QuickBooks Desktop Sync alternative app subscription cost
Connect with us to harness the full potential of your selected QuickBooks Desktop Sync Shopify Alternative without any hassle.
Frequently Asked Questions for QuickBooks Desktop Sync Shopify Alternatives
Free Alternatives to QuickBooks Desktop Sync
Looking for a no-cost alternative to QuickBooks Desktop Sync? We've curated a list of free QuickBooks Desktop Sync alternatives that provide a wide range of functionalities at no charge. It's perfect for startups and small businesses looking to maximize their e-commerce potential without paying a penny. Check out the full list here.